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In my experience, getting someone else's code from a paper to run is a PITA. In life science, the person who wrote the code is often not really that experienced in this kind of thing, and certainly didn't have ease of sharing and running in mind when they started the project.

I've long had in the back of my mind some kind of cloud-based platform for writing, running, storing, and sharing scientific code. It would be the standard, and journals would (in time) ask that analysis be done using it, or that reasons are provided as to why it could not be used.

Maybe one already exists?



> I've long had in the back of my mind some kind of cloud-based platform for writing, running, storing, and sharing scientific code.

And now there are 15 competing standards.

Everyone uses the computing resources available at their institution, and each institution makes its own choices. Running someone else's code almost always involves migrating it to a new environment. Even using something as common as Docker is problematic, as it doesn't always interact nicely with the rest of the environment (such as Slurm).


One success story is that of the imageJ/Fiji project, which provided/provides a standard way of writing and running image analysis workflows.




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