A similar thing could easily be done with other approaches: a typo of a feature name would have the same effect. The main issue is autoconf is such a mess of layered bad scripting languages it's impossible to really get a good idea of what is actually going on.
In general I think feature detection is probably not necessary for most cases (especially the cases that a huge number of autoconf scripts do: the number of linux-only projects which have feature detection for a feature which is certainly present is ridiculous). It's much more reasonable to just try to build with all features, and provide manual flags to disable unwanted or unavailable ones. These at least mean the user/maintainer can decide more explicitly if that feature should be present or not.
In general I think feature detection is probably not necessary for most cases (especially the cases that a huge number of autoconf scripts do: the number of linux-only projects which have feature detection for a feature which is certainly present is ridiculous). It's much more reasonable to just try to build with all features, and provide manual flags to disable unwanted or unavailable ones. These at least mean the user/maintainer can decide more explicitly if that feature should be present or not.