ADAM (Big Data Genomics, code-base I think worked currently by UC Berkeley AMPLab and Microsoft Research group focused on cancer research) https://github.com/bigdatagenomics/adam/labels/pick%20me%20u...
BioConductor (R package that is very popular for crunching different genomic analysis, RNA-Seq)https://www.bioconductor.org/developers/
Galaxy (Platform for reproducible genomics workflows in the cloud)https://wiki.galaxyproject.org/Support
Public Available Data Sets:
Cancer Genome Atlas (contains expression data for different kinds of cancer) http://cancergenome.nih.gov/
NCBI Short Reads Archive (contains the genome assembly of a lot of published papers): https://www.ncbi.nlm.nih.gov/sra
European Nucleotide Archive: http://www.ebi.ac.uk/ena, e.g.,
For a recent major paper, "The Simons Genome Diversity Project: 300 genomes from 142 diverse populations"; you can grep for "accession code"(http://www.nature.com/nature/journal/vaop/ncurrent/full/natu...), follow the link and download the whole raw assemblies of all samples here: http://www.ebi.ac.uk/ena/data/view/PRJEB9586
MOOC:
https://www.edx.org/xseries/genomics-data-analysis
https://www.coursera.org/specializations/bioinformatics
StackOverflow:
https://www.biostars.org/
http://seqanswers.com/
Jobs:
NYGC, JCVI, CRB, Sanger, BGI, Broad, NIH, NCBI, Janelia Farm; any research group in universities; any informatics job at pharmaceutical or pharma startups.
ADAM (Big Data Genomics, code-base I think worked currently by UC Berkeley AMPLab and Microsoft Research group focused on cancer research) https://github.com/bigdatagenomics/adam/labels/pick%20me%20u...
BioConductor (R package that is very popular for crunching different genomic analysis, RNA-Seq)https://www.bioconductor.org/developers/
Galaxy (Platform for reproducible genomics workflows in the cloud)https://wiki.galaxyproject.org/Support
Public Available Data Sets:
Cancer Genome Atlas (contains expression data for different kinds of cancer) http://cancergenome.nih.gov/
NCBI Short Reads Archive (contains the genome assembly of a lot of published papers): https://www.ncbi.nlm.nih.gov/sra
European Nucleotide Archive: http://www.ebi.ac.uk/ena, e.g.,
For a recent major paper, "The Simons Genome Diversity Project: 300 genomes from 142 diverse populations"; you can grep for "accession code"(http://www.nature.com/nature/journal/vaop/ncurrent/full/natu...), follow the link and download the whole raw assemblies of all samples here: http://www.ebi.ac.uk/ena/data/view/PRJEB9586
MOOC:
https://www.edx.org/xseries/genomics-data-analysis
https://www.coursera.org/specializations/bioinformatics
StackOverflow:
https://www.biostars.org/
http://seqanswers.com/
Jobs:
NYGC, JCVI, CRB, Sanger, BGI, Broad, NIH, NCBI, Janelia Farm; any research group in universities; any informatics job at pharmaceutical or pharma startups.